featureFiltration: Filters cells from a Seurat object based upon the amount of...

In basilkhuder/extendSC: Extends functionalities of scRNA-Seq workflows

Description

Filters cells from a Seurat object based upon the amount of features and percentage of mitochondrial genes

Usage

featureFiltration(
  seurat.obj,
  mito.low = 0.05,
  mito.high = 0.975,
  feature.cut = 0.975
)

Arguments

seurat.obj	A seurat object.
mito.low	Filter cells that have total mitochondrial genes low than this quantile
mito.high	Filter cells that have total mitochondrial genes higher than this quantile
feature.cut	Filter cells that have total features higher than this quantile

Examples

featureFiltration(seurat.obj, mito.low = .5, mito.high = .975, feature.cut = .975)

basilkhuder/extendSC documentation built on July 23, 2021, 1:17 p.m.