invivoYears: Plot in vivo results

In bastiaanvdroest/DriverProbabilities: Risk analysis of mutating driver genes

Description

Function to plot \(a subset of\) the number of in vitro grown SI ASC, with the probability on oncogenic mutation, compared to number of years of in vivo mutation accumulation of SI ASC.

Usage

invivoYears(r, gene = "all", dep_invitro, CDS_length)

Arguments

r	Dataframe with results from probDriverMut
gene	Character string to indicate which gene must be analyzed
dep_invitro	List with enrichment/depletion test results of invitro experiments
CDS_length	Numeric with length of Coding Sequence of 'in vivo' cell type

Value

Extended version of results from probDriverMut, with in column year the amount of years in vivo

Examples

r = probDriverMut(cell_type = cell_types, gene = "all")

invivo_plot = plotInvivoResults(r, gene = "all", dep_invitro = CDS_dep, 
                                CDS_length = CDS_length[["SI"]])

bastiaanvdroest/DriverProbabilities documentation built on Dec. 8, 2019, 10:29 a.m.