plotInvivoResults: Plot in vivo results

In bastiaanvdroest/DriverProbabilities: Risk analysis of mutating driver genes

Description

Function to plot \(a subset of\) the number of in vitro grown SI ASC, with the probability on oncogenic mutation, compared to number of years of in vivo mutation accumulation of SI ASC.

Usage

plotInvivoResults(r, cell_type = "SI", gene = "all", color = "black",
  xlab = "Probability", ylab = "Number of cells", title = "",
  pdf_out)

Arguments

r	Dataframe with results from probDriverMut
gene	Character string to indicate which gene must be plotted
color	Character string for color of line in figure
xlab	Character string with label for x-axis. Default is "Number of cells"
ylab	Character string with label for y-axis. Default is "Number of SNVs in oncogenes"
title	Character string with title of figure. Default is no title
pdf_out	Character with file name where to save the figure. If not given, figure will not be saved, only returned from function

Value

Plot of probablity on oncogenic mutations against cell numbers and years of in vivo mutation accumulation

Examples

r = data.frame(cells = calcCellNumb, muts = calcMutEvents, probs = probDriverMut)

invivo_plot = plotInvivoResults(r, gene = "all", color = "red")

bastiaanvdroest/DriverProbabilities documentation built on Dec. 8, 2019, 10:29 a.m.