countDriverSNVs: Counting driver activating mutations

In bastiaanvdroest/DriverProbabilities: Risk analysis of mutating driver genes

Description

Counts the number of driver activating mutations in a gene or in total

Usage

countDriverSNVs(drivers, per_gene = F, tri = F)

Arguments

drivers	Dataframe with 2 columns. First column must be gene ID and second the mutations
per_gene	Indicating if driver mutations are counted per gene, default is FALSE

Value

Table of counts of the 6 mutation types 'C>A', 'C>G, 'C>T, 'T>A', 'T>C', 'T>G'

Examples

drivers = data.frame(gene=c('ABL1','ABL1'),gdna=c('G>A','A>G'), stringsAsFactors=FALSE)
countDriverSNVs(drivers)

bastiaanvdroest/DriverProbabilities documentation built on Dec. 8, 2019, 10:29 a.m.