README.md
In bcm-uga/RiTMIC: A R package for RegulatIon of Tumor MIcroenvironment Composition
Ritmic
Ritmic, for RegulatIon of Tumor MIcroenvironment Composition is an R package to study the link between the gene expression in a tumor and the microenvironment composition.
The pipeline Ritmic is in 4 steps:
- Deconvolution of the bulk samples to obtain the cell type composition.
- Extraction of the cancer expression.
- Differential analysis of the gene expression in the cancer component.
- Analyze of the link between the gene expression in the cancer and the tumor composition.
This package allows to use the method. The package Ritmic_simu implements simulations to test it.
Installation
To use the package
install.packages("devtools")
devtools::install_github(https://github.com/bcm-uga/Ritmic.git)
bcm-uga/RiTMIC documentation built on June 16, 2022, 2:41 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Ritmic
Ritmic, for RegulatIon of Tumor MIcroenvironment Composition is an R package to study the link between the gene expression in a tumor and the microenvironment composition.
The pipeline Ritmic is in 4 steps:
- Deconvolution of the bulk samples to obtain the cell type composition.
- Extraction of the cancer expression.
- Differential analysis of the gene expression in the cancer component.
- Analyze of the link between the gene expression in the cancer and the tumor composition.
This package allows to use the method. The package Ritmic_simu implements simulations to test it.
Installation
To use the package
install.packages("devtools")
devtools::install_github(https://github.com/bcm-uga/Ritmic.git)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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