calc_corr: Correlation between gene expression and cell type proportion.
In bcm-uga/RiTMIC: A R package for RegulatIon of Tumor MIcroenvironment Composition
View source: R/ritmic_analysis.R
calc_corr R Documentation
Correlation between gene expression and cell type proportion.
Description
calc_corr compute the correlation between the gene expression in
tumors and the micro-environment proportion.
Usage
calc_corr(D_cancer, A)
Arguments
D_cancer
The matrix with the gene expression in each tumor.
A
The matrix of cell type proportions for each sample.
Value
A data frame with for each gene and each cell type the
correlation between the gene expression and the cell type proportion.
bcm-uga/RiTMIC documentation built on June 16, 2022, 2:41 p.m.
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View source: R/ritmic_analysis.R
| calc_corr | R Documentation |
Correlation between gene expression and cell type proportion.
Description
calc_corr compute the correlation between the gene expression in
tumors and the micro-environment proportion.
Usage
calc_corr(D_cancer, A)
Arguments
D_cancer |
The matrix with the gene expression in each tumor. |
A |
The matrix of cell type proportions for each sample. |
Value
A data frame with for each gene and each cell type the correlation between the gene expression and the cell type proportion.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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