pre_treat_Dcancer: Pretreatment of the Dcancer matrix

In bcm-uga/RiTMIC: A R package for RegulatIon of Tumor MIcroenvironment Composition

Pretreatment of the Dcancer matrix

Description

pre_treat_Dcancer pretreat the Dcancer matrix to remove genes with a negative expression and samples with a proportion of cancer cells under prop_cancer_threshold.

Usage

pre_treat_Dcancer(Dcancer, A_cancer, prop_cancer_threshold = 0.1)

Arguments

Dcancer	The matrix of gene expression in each cancer sample.
A_cancer	A vector with the cancer cell proportion in each sample.
prop_cancer_threshold	The minimum proportion of cancer cells needed to keep the sample.

Value

The Dcancer matrix without negative expression and samples with a cancer proportion under prop_cancer_threshold.

bcm-uga/RiTMIC documentation built on June 16, 2022, 2:41 p.m.