Files in beast-dev/RBeast
Create BEAST and BEAST2 input files and parse their output

.Rbuildignore
.gitignore
.lintr
.travis.yml
Codecov.png
DESCRIPTION
LICENSE
NAMESPACE
R/annotatedTreeReader.R R/calc_act.R R/calc_ess.R R/calc_esses.R R/drop_tip_write_annot_tree.R R/is_posterior.R R/is_trees_posterior.R R/newCode.R R/parse_beast_log.R R/parse_beast_posterior.R R/parse_beast_state.R R/parse_beast_trees.R R/plotStackedAreas.R R/read_beast2_trees.R R/remove_burn_in.R R/remove_burn_ins.R
RBeast.Rproj
README.md
TravisCI.png
inst/extdata/beast2_example_output.log
inst/extdata/beast2_example_output.trees
inst/extdata/beast2_example_output.xml
inst/extdata/beast2_example_output.xml.state
inst/extdata/read_beast2_trees_example.trees
inst/java/beast.jar
man/calc_act.Rd man/calc_act_r.Rd man/calc_ess.Rd man/calc_esses.Rd man/is_posterior.Rd man/is_trees_posterior.Rd man/parse_beast_log.Rd man/parse_beast_posterior.Rd man/parse_beast_state_operators.Rd man/parse_beast_trees.Rd man/read_beast2_trees.Rd man/remove_burn_in.Rd man/remove_burn_ins.Rd man/runBeast.Rd tests/testthat.R tests/testthat/test-calc_act.R tests/testthat/test-calc_ess.R tests/testthat/test-calc_esses.R tests/testthat/test-is_posterior.R tests/testthat/test-is_trees_posterior.R tests/testthat/test-parse_beast_log.R tests/testthat/test-parse_beast_state_operators.R tests/testthat/test-parse_beast_trees.R tests/testthat/test-read_beast2_trees.R tests/testthat/test-remove_burn_in.R tests/testthat/test-remove_burn_ins.R vignettes/demo_estimate_effective_sample_size.R vignettes/demo_estimate_effective_sample_size.Rmd
vignettes/demo_estimate_effective_sample_size.html
vignettes/profile_calc_act.R vignettes/profile_calc_act.Rmd
vignettes/profile_calc_act.html
vignettes/profile_calc_esses.R vignettes/profile_calc_esses.Rmd
vignettes/profile_calc_esses.html
vignettes/read_beast2_trees.R vignettes/read_beast2_trees.Rmd
vignettes/read_beast2_trees.html
beast-dev/RBeast documentation built on March 23, 2018, 4:30 a.m.