Files in beast-dev/RBeast
Create BEAST and BEAST2 input files and parse their output
.Rbuildignore
.gitignore
.lintr
.travis.yml
Codecov.png
DESCRIPTION
LICENSE
NAMESPACE
R/annotatedTreeReader.R
R/calc_act.R
R/calc_ess.R
R/calc_esses.R
R/drop_tip_write_annot_tree.R
R/is_posterior.R
R/is_trees_posterior.R
R/newCode.R
R/parse_beast_log.R
R/parse_beast_posterior.R
R/parse_beast_state.R
R/parse_beast_trees.R
R/plotStackedAreas.R
R/plot_glm.R
R/read_beast2_trees.R
R/remove_burn_in.R
R/remove_burn_ins.R
RBeast.Rproj
README.md
TravisCI.png
inst/extdata/beast2_example_output.log
inst/extdata/beast2_example_output.trees
inst/extdata/beast2_example_output.xml
inst/extdata/beast2_example_output.xml.state
inst/extdata/beast_glm_example.log
inst/extdata/read_beast2_trees_example.trees
inst/java/beast.jar
man/calc_act.Rd
man/calc_act_r.Rd
man/calc_ess.Rd
man/calc_esses.Rd
man/is_posterior.Rd
man/is_trees_posterior.Rd
man/parse_beast_log.Rd
man/parse_beast_posterior.Rd
man/parse_beast_state_operators.Rd
man/parse_beast_trees.Rd
man/plot_glm.Rd
man/plot_simple_glm.Rd
man/read_beast2_trees.Rd
man/remove_burn_in.Rd
man/remove_burn_ins.Rd
man/runBeast.Rd
tests/testthat.R
tests/testthat/test-calc_act.R
tests/testthat/test-calc_ess.R
tests/testthat/test-calc_esses.R
tests/testthat/test-is_posterior.R
tests/testthat/test-is_trees_posterior.R
tests/testthat/test-parse_beast_log.R
tests/testthat/test-parse_beast_state_operators.R
tests/testthat/test-parse_beast_trees.R
tests/testthat/test-read_beast2_trees.R
tests/testthat/test-remove_burn_in.R
tests/testthat/test-remove_burn_ins.R
vignettes/GLM_plot.Rmd
vignettes/demo_estimate_effective_sample_size.R
vignettes/demo_estimate_effective_sample_size.Rmd
vignettes/demo_estimate_effective_sample_size.html
vignettes/profile_calc_act.R
vignettes/profile_calc_act.Rmd
vignettes/profile_calc_act.html
vignettes/profile_calc_esses.R
vignettes/profile_calc_esses.Rmd
vignettes/profile_calc_esses.html
vignettes/read_beast2_trees.R
vignettes/read_beast2_trees.Rmd
vignettes/read_beast2_trees.html
