parse_beast_log: Parses a BEAST2 .log output file
In beast-dev/RBeast: Create BEAST and BEAST2 input files and parse their output

Description Usage Arguments Value Author(s) Examples

Parses a BEAST2 .log output file

1	parse_beast_log(filename)

filename

name of the BEAST2 .log output file

data frame with all the parameter estimates

Richel J.C. Bilderbeek

  log_filename <- system.file(
    "extdata", "beast2_example_output.log", package = "RBeast"
  )
  estimates <- parse_beast_log(filename = log_filename)
  expected_names <- c(
    "Sample", "posterior", "likelihood",
    "prior", "treeLikelihood", "TreeHeight",
    "BirthDeath", "birthRate2", "relativeDeathRate2"
  )
  testit::assert(names(estimates) == expected_names)