Man pages for beast-dev/RBeast
Create BEAST and BEAST2 input files and parse their output
| calc_act | Calculate the auto-correlation time, alternative... |
| calc_act_r | Calculate the auto-correlation time using only R. Consider... |
| calc_ess | Calculates the Effective Sample Size |
| calc_esses | Calculates the Effective Sample Sizes from a parsed BEAST2... |
| is_posterior | Determines if the input is a BEAST2 posterior |
| is_trees_posterior | Determines if the input is a BEAST2 posterior, as parsed by... |
| parse_beast_log | Parses a BEAST2 .log output file |
| parse_beast_posterior | Parses BEAST2 output files to a posterior |
| parse_beast_state_operators | Parses a BEAST2 .xml.state output file to get only the... |
| parse_beast_trees | Parses a BEAST2 .trees output file |
| plot_glm | Plots the results of a GLM analysis from BEAST |
| plot_simple_glm | Plots the results of a GLM analysis from BEAST |
| read_beast2_trees | Extract a list of phylogenies from a BEAST2 posterior file |
| remove_burn_in | Removed the burn-in from a trace |
| remove_burn_ins | Removed the burn-ins from a data frame |
| runBeast | runBeast |
