eSetToLongTable: Transform eSet to long data.frame

In bedapub/ribiosExpression: Expression Analysis with RibiosExpression

Transform eSet to long data.frame

Description

Transform eSet to long data.frame

Usage

eSetToLongTable(
  x,
  exprsFun = function(eset) Biobase::exprs(eset),
  includeOtherAssayData = FALSE
)

Arguments

x	An eSet object
exprsFun	A function to extract expression values, by default exprs
includeOtherAssayData	Logical, whether other elements in the assayData environment (if present) should be returned. The function extracts exprs (and other values in the assayData environment), and return it in a long data.frame format with phenotypic data

Examples

data(ribios.ExpressionSet, package="ribiosExpression")
exprsLongTbl <- eSetToLongTable(ribios.ExpressionSet)
seLongTbl <- eSetToLongTable(ribios.ExpressionSet, 
   exprsFun=function(eset) Biobase::assayData(eset)$se.exprs)

bedapub/ribiosExpression documentation built on Sept. 2, 2023, 4:37 a.m.