API for bedapub/ribiosExpression
Expression analysis component of ribios

Global functions
.contrastSampleIndices Source code
ChipFetcher2ExpressionSet Man page Source code
DesignContrast Man page Source code
DesignContrast-class Man page
annChar Source code
annotate Man page
annotate,character,character,logical-method Man page
annotate,character,character,missing-method Man page
annotate,eSet,character,logical-method Man page
annotate,eSet,character,missing-method Man page
assertFullRank Man page Source code
avgReplicates Man page Source code
contrastMatrix Man page
contrastMatrix,DesignContrast-method Man page
contrastMatrix,MArrayLM-method Man page
contrastNames Man page
contrastNames,DesignContrast-method Man page
contrastNames,MArrayLM-method Man page
contrastSampleIndices Man page
contrastSampleIndices,DesignContrast,character-method Man page
contrastSampleIndices,DesignContrast,numeric-method Man page
dataFrameTwoVecs Man page Source code
design2group Man page Source code
designMatrix Man page
designMatrix,DesignContrast-method Man page
designMatrix,MArrayLM-method Man page
designVariables Man page
designVariables,DesignContrast-method Man page
dispGroups Man page
dispGroups,DesignContrast-method Man page
eSetToLongTable Man page Source code
eset2cls Man page Source code
eset2gct Man page Source code
exprsToLong Man page
exprsToLong,eSet-method Man page
exprsToLong,matrix-method Man page
exprsToLong-eSet-method Man page
exprsToLong-matrix-method Man page
fixEmptyColumnName Man page Source code
formatGmt Man page
formatGmt,character,character,character-method Man page
formatGmt,character,character,list-method Man page
formatGmt,character,missing,character-method Man page
formatGmt,character,missing,list-method Man page
getDfCol Source code
groups Man page
groups,DesignContrast-method Man page
grp2gmt Man page Source code
grpFiles2gmt Man page Source code
isInputDesignConsistent Man page Source code
keepHighestVarProbe Source code
keepMaxStatProbe Man page Source code
limmaTopTable2dgeTable Man page Source code
matrixToLongTable Man page Source code
mergeEset Man page Source code
nContrast Man page
nContrast,DesignContrast-method Man page
parseContrastStr Man page Source code
parseDesignContrast Man page Source code
parseDesignContrastFile Man page Source code
parseDesignContrastStr Man page Source code
partek2ExpressionSet Source code
plainFile2ConcString Source code
poolReplicates Man page Source code
rankByCol Source code
readAnnotationFile Man page Source code
readEset Man page Source code
readExprsMatrix Man page Source code
readFKtable Man page Source code
readFeatureAnnotationFile Man page Source code
readGct Man page Source code
readGctCls Man page Source code
readSampleAnnotationFile Man page Source code
read_cls Man page
reannotate Man page
reannotate,eSet,logical-method Man page
reannotate,eSet,missing-method Man page
remainHighestVarProbe Source code
removeColRank Man page Source code
ribios.ExpressionSet Man page
ribiosExpression-package Man page
rowscale.ExpressionSet Man page Source code
show,DesignContrast-method Man page
sniffFeatureType Man page Source code
splitPCA Man page Source code
summarizeProbesets Man page Source code
summarizeSamples Man page Source code
truncateDgeTable Man page Source code
vectorizeExprs Source code
writeCls Man page Source code
writeEset Man page Source code
writeGct Man page
writeGct,eSet,ANY,ANY,ANY-method Man page
writeGct,eSet-method Man page
writeGct,matrix,ANY,ANY,ANY-method Man page
writeGct,matrix-method Man page
writeGctCls Man page Source code
writeSampleGroups Man page Source code
bedapub/ribiosExpression documentation built on July 22, 2020, 4:07 p.m.