Global functions | |
---|---|
.contrastSampleIndices | Source code |
DesignContrast | Man page Source code |
DesignContrast-class | Man page |
annotate | Man page |
assertFullRank | Man page Source code |
avgReplicates | Man page Source code |
contrastAnnotation | Man page |
contrastAnnotation,DesignContrast-method | Man page |
contrastAnnotation<- | Man page |
contrastAnnotation<-,DesignContrast-method | Man page |
contrastMatrix | Man page |
contrastMatrix,DesignContrast-method | Man page |
contrastMatrix,MArrayLM-method | Man page |
contrastMatrix<- | Man page |
contrastMatrix<-,DesignContrast-method | Man page |
contrastNames | Man page |
contrastNames,DesignContrast-method | Man page |
contrastNames,MArrayLM-method | Man page |
contrastSampleIndices | Man page |
contrastSampleIndices,DesignContrast,character-method | Man page |
contrastSampleIndices,DesignContrast,numeric-method | Man page |
dataFrameTwoVecs | Man page Source code |
design2group | Man page Source code |
designMatrix | Man page |
designMatrix,DesignContrast-method | Man page |
designMatrix,MArrayLM-method | Man page |
designMatrix<- | Man page |
designMatrix<-,DesignContrast-method | Man page |
designVariables | Man page |
designVariables,DesignContrast-method | Man page |
dispGroups | Man page |
dispGroups,DesignContrast-method | Man page |
eSetToLongTable | Man page Source code |
eset2cls | Man page Source code |
eset2gct | Man page Source code |
exprsToLong | Man page |
exprsToLong,eSet-method | Man page |
exprsToLong,matrix-method | Man page |
exprsToLong-eSet-method | Man page |
exprsToLong-matrix-method | Man page |
fixDesignMatrixColnames | Man page Source code |
fixEmptyColumnName | Man page Source code |
formatGmt | Man page |
formatGmt,character,character,character-method | Man page |
formatGmt,character,character,list-method | Man page |
formatGmt,character,missing,character-method | Man page |
formatGmt,character,missing,list-method | Man page |
getDfCol | Source code |
groups | Man page |
groups,DesignContrast-method | Man page |
grp2gmt | Man page Source code |
grpFiles2gmt | Man page Source code |
isInputDesignConsistent | Man page Source code |
keepHighestVarProbe | Source code |
keepMaxStatProbe | Man page Source code |
limmaDgeTable | Man page Source code |
limmaTopTable2dgeTable | Man page Source code |
matrixToLongTable | Man page Source code |
medianReplicates | Man page Source code |
mergeEset | Man page Source code |
nContrast | Man page |
nContrast,DesignContrast-method | Man page |
parseContrastStr | Man page Source code |
parseDesignContrast | Man page Source code |
parseDesignContrastFile | Man page Source code |
parseDesignContrastStr | Man page Source code |
plainFile2ConcString | Source code |
plot.DesignContrast | Man page Source code |
poolReplicates | Man page Source code |
rankByCol | Source code |
readAnnotationFile | Man page Source code |
readEset | Man page Source code |
readExprsMatrix | Man page Source code |
readFKtable | Man page Source code |
readFeatureAnnotationFile | Man page Source code |
readGct | Man page Source code |
readGctCls | Man page Source code |
readSampleAnnotationFile | Man page Source code |
read_cls | Man page |
reannotate | Man page |
reannotate,eSet,logical-method | Man page |
reannotate,eSet,missing-method | Man page |
remainHighestVarProbe | Source code |
removeAllZeroVar | Man page Source code |
removeAllZeroVar.DesignContrast | Man page Source code |
removeAllZeroVar.matrix | Man page Source code |
removeColRank | Man page Source code |
ribios.ExpressionSet | Man page |
ribiosExpression-package | Man page |
ribiosExpressionSet | Man page |
rowscale.ExpressionSet | Man page Source code |
show,DesignContrast-method | Man page |
sniffFeatureType | Man page Source code |
splitPCA | Man page Source code |
summarizeProbesets | Man page Source code |
summarizeSamples | Man page Source code |
truncateDgeTable | Man page Source code |
vectorizeExprs | Source code |
writeCls | Man page Source code |
writeEset | Man page Source code |
writeGct | Man page |
writeGct,eSet,ANY,ANY,ANY-method | Man page |
writeGct,eSet-method | Man page |
writeGct,matrix,ANY,ANY,ANY-method | Man page |
writeGct,matrix-method | Man page |
writeGctCls | Man page Source code |
writeSampleGroups | Man page Source code |
writeVarMetadata | Man page Source code |
writeVarMetadata.default | Man page Source code |
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