| AnnoBroadGseaRes |
Man page
Source code
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| AnnoBroadGseaRes-class |
Man page
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| AnnoBroadGseaResItem |
Man page
Source code
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| AnnoBroadGseaResItem-class |
Man page
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| AnnoBroadGseaResList-class |
Man page
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| BroadGseaResItem-class |
Man page
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| DGEList |
Man page
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| DesignContrast |
Man page
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| EdgeObject |
Man page
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| FisherResult-class |
Man page
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| FisherResultList-class |
Man page
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| GeMS_BASE_URL |
Man page
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| GeMS_GENESETS_URL |
Man page
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| GeMS_INSERT_URL |
Man page
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| GeMS_REMOVE_URL |
Man page
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| GeMS_TEST_GENESETS_URL |
Man page
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| GeMS_TEST_URL |
Man page
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| GeneSetResult-class |
Man page
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| [,AnnoBroadGseaRes,ANY,ANY,ANY-method |
Man page
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| [,FisherResultList,ANY,missing,missing-method |
Man page
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| [,FisherResultList,character,character,missing-method |
Man page
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| `kendallWinfo<-.matrix` |
Source code
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| `kendallWinfo<-` |
Source code
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| as.data.frame,FisherResultList-method |
Man page
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| biosCamera |
Man page
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| buildBroadGSEAcomm |
Man page
Source code
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| camera |
Man page
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| camera.EdgeResult |
Man page
Source code
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| camera.LimmaVoomResult |
Man page
Source code
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| cameraDGEListByContrast |
Man page
Source code
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| cameraLimmaVoomResultsByContrast |
Man page
Source code
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| cameraTable2graph |
Man page
Source code
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| cpp_geneSetPerm |
Source code
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| cpp_list2mat |
Source code
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| designMatrix |
Man page
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| doGse |
Man page
Source code
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| expandCameraTableGenes |
Man page
Source code
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| factorByNumberInStr |
Man page
Source code
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| fdrValue |
Man page
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| fdrValue,FisherResult-method |
Man page
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| fdrValue,FisherResultList-method |
Man page
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| filterBySize |
Man page
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| fisherTest |
Man page
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| fisherTest,character,GmtList,character-method |
Man page
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| fisherTest,character,character,character-method |
Man page
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| fisherTest,character,list,character-method |
Man page
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| fisherTestEdgeResult |
Man page
Source code
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| fisherTestResultNewHitsProp |
Man page
Source code
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| fishersMethod |
Man page
Source code
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| geneSetPerm |
Man page
Source code
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| getCores |
Source code
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| getFDRCol |
Man page
Source code
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| getJsonResponse |
Man page
Source code
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| getPvalCol |
Man page
Source code
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| getSetWithNameFromGeMS |
Man page
Source code
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| getSetsWithNamesFromGeMS |
Man page
Source code
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| getSetsWithPropertyFromGeMS |
Man page
Source code
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| getUserSetsFromGeMS |
Man page
Source code
|
| gsEffectiveSize |
Man page
|
| gsEffectiveSize,FisherResult-method |
Man page
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| gsEffectiveSize,FisherResultList-method |
Man page
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| gsFisherTestCore |
Man page
Source code
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| gsGeneCount |
Man page
|
| gsGeneIndices |
Man page
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| gsGeneIndices,BroadGseaResItem-method |
Man page
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| gsGeneValues |
Man page
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| gsGeneValues,AnnoBroadGseaRes-method |
Man page
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| gsGeneValues,AnnoBroadGseaResItem-method |
Man page
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| gsGeneValues<- |
Man page
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| gsGeneValues<-,AnnoBroadGseaResItem,numeric-method |
Man page
|
| gsGenes |
Man page
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| gsGenes,AnnoBroadGseaRes-method |
Man page
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| gsGenes,AnnoBroadGseaResItem-method |
Man page
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| gsGenes,GmtList-method |
Man page
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| gsGenes<- |
Man page
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| gsGenes<-,AnnoBroadGseaResItem,character-method |
Man page
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| gsListFisherTestCore |
Man page
Source code
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| gsName |
Man page
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| gsName,AnnoBroadGseaRes-method |
Man page
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| gsName,BroadGseaResItem-method |
Man page
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| gsName,FisherResult-method |
Man page
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| gsName,FisherResultList-method |
Man page
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| gsName,GmtList-method |
Man page
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| gsNamespace |
Man page
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| gsNamespace,FisherResult-method |
Man page
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| gsNamespace,FisherResultList-method |
Man page
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| gsNamespace,GmtList-method |
Man page
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| gsSize |
Man page
Source code
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| gseaCoreEnrichGenes |
Man page
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| gseaCoreEnrichGenes,AnnoBroadGseaRes-method |
Man page
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| gseaCoreEnrichGenes,AnnoBroadGseaResItem-method |
Man page
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| gseaCoreEnrichThr |
Man page
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| gseaCoreEnrichThr,AnnoBroadGseaRes-method |
Man page
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| gseaCoreEnrichThr,BroadGseaResItem-method |
Man page
|
| gseaES |
Man page
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| gseaES,AnnoBroadGseaRes-method |
Man page
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| gseaES,AnnoBroadGseaResList-method |
Man page
|
| gseaES,BroadGseaResItem-method |
Man page
|
| gseaESprofile |
Man page
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| gseaESprofile,BroadGseaResItem-method |
Man page
|
| gseaFDR |
Man page
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| gseaFDR,AnnoBroadGseaRes-method |
Man page
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| gseaFDR,AnnoBroadGseaResList-method |
Man page
|
| gseaFDR,BroadGseaResItem-method |
Man page
|
| gseaFWER |
Man page
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| gseaFWER,AnnoBroadGseaRes-method |
Man page
|
| gseaFWER,AnnoBroadGseaResList-method |
Man page
|
| gseaFWER,BroadGseaResItem-method |
Man page
|
| gseaFingerprint |
Man page
Source code
|
| gseaFingerprintMatrix |
Man page
Source code
|
| gseaLeadingEdgeGenes |
Man page
|
| gseaLns |
Source code
|
| gseaNES |
Man page
|
| gseaNES,AnnoBroadGseaRes-method |
Man page
|
| gseaNES,AnnoBroadGseaResList-method |
Man page
|
| gseaNES,BroadGseaResItem-method |
Man page
|
| gseaNP |
Man page
|
| gseaNP,AnnoBroadGseaRes-method |
Man page
|
| gseaNP,AnnoBroadGseaResList-method |
Man page
|
| gseaNP,BroadGseaResItem-method |
Man page
|
| gseaResES |
Man page
Source code
|
| gseaResQvalue |
Man page
Source code
|
| gseaScore |
Man page
Source code
|
| gseaScores |
Man page
Source code
|
| hits |
Man page
|
| hits,FisherResult-method |
Man page
|
| hits,FisherResultList-method |
Man page
|
| insertGmtListToGeMS |
Man page
Source code
|
| insertGmtListToGeMSBody |
Man page
Source code
|
| isGeMSReachable |
Man page
Source code
|
| isGseaCoreEnrich |
Man page
Source code
|
| isSigGeneSet |
Man page
Source code
|
| kendallW |
Man page
Source code
|
| kendallW.eSet |
Man page
Source code
|
| kendallW.matrix |
Man page
Source code
|
| kendallWinfo |
Man page
Source code
|
| kendallWinfo.matrix |
Source code
|
| kendallWmat |
Man page
Source code
|
| kmeansGeneset |
Man page
Source code
|
| list2mat |
Man page
Source code
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| logFCgage |
Man page
Source code
|
| mergeCameraResults |
Man page
Source code
|
| minFDRvalue |
Man page
Source code
|
| minPvalue |
Man page
Source code
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| myGage |
Man page
Source code
|
| orderByNumberInStr |
Man page
Source code
|
| pValue |
Man page
|
| pValue,FisherResult-method |
Man page
|
| pValue,FisherResultList-method |
Man page
|
| parseCameraContributingGenes |
Man page
Source code
|
| parseContributingGenes |
Man page
Source code
|
| parseDTG |
Source code
|
| parseGSEAdir |
Man page
Source code
|
| parseGSEAedb |
Source code
|
| parseGSEAres |
Source code
|
| parseGenesetsContributingGenes |
Man page
Source code
|
| prettyRonetGenesetNames |
Man page
Source code
|
| print.FisherResult |
Man page
Source code
|
| print.FisherResultList |
Man page
Source code
|
| print.FishersMethodResult |
Man page
Source code
|
| printContributingGenes |
Man page
Source code
|
| readCameraResults |
Man page
Source code
|
| readDefaultGenesets |
Man page
Source code
|
| readMPSGmt |
Man page
Source code
|
| readRonetGmt |
Man page
Source code
|
| readSigCameraResults |
Man page
Source code
|
| readSigCameraScoreMatrix |
Man page
Source code
|
| reexports |
Man page
|
| removeFromGeMS |
Man page
Source code
|
| removeFromGeMSBody |
Man page
Source code
|
| ribiosGSEA-package |
Man page
|
| ronetGeneSetNamespace |
Man page
Source code
|
| show,AnnoBroadGseaRes-method |
Man page
|
| show,AnnoBroadGseaResItem-method |
Man page
|
| show,BroadGseaResItem-method |
Man page
|
| sigGeneSet |
Man page
Source code
|
| sigGeneSetTable |
Man page
Source code
|
| topGeneSetTable |
Man page
Source code
|
| topOrSigGeneSetTable |
Man page
Source code
|
| vec2mat |
Source code
|
| writeGmt |
Man page
Source code
|
| zscoreDGE |
Man page
Source code
|
