gnomad_scores: GnomAD Scores

In berkgurdamar/predatoR: Mutation Impact Prediction Based on Network Properties

GnomAD Scores

Description

Function gets input gene's gnomAD Synonymous Z-Score, Non-Synonymous Z-Score, and PLI Score from data retrieved from gnomAD. If there is no gene name information in the input, gnomad_scores finds the genes that related with input PDB chain ID by using a dataset retrieved from Ensembl. If there are multiple genes annotated for same PDB, gnomad_scores function gets the gene that has the maximum Synonymous Z-Score, Non-Synonymous Z-Score, and pLI Score.

Usage

gnomad_scores(filtered_info_df)

Arguments

filtered_info_df

input data.frame which contain only one PDB entries

Value

gnomAD scores added input data.frame

berkgurdamar/predatoR documentation built on Jan. 10, 2023, 10:51 p.m.