read_PDB: PDB Reading/Downloading

In berkgurdamar/predatoR: Mutation Impact Prediction Based on Network Properties

PDB Reading/Downloading

Description

Download/Read input PDB via get.pdb and read.pdb function of bio3d package and filter the PDB file for only containing atoms.

Usage

read_PDB(PDB_ID, PDB_path = NULL, network_approach = "ca")

Arguments

PDB_ID	PDB ID
PDB_path	PDB file path (default = NULL)
network_approach	network building approach; "ca" (default) for using ca atoms only or "all" for using all atoms

Value

Matrix that contains all the atoms in the PDB structure

berkgurdamar/predatoR documentation built on Jan. 10, 2023, 10:51 p.m.