shorteset_path_score: Shortest Path Score
In berkgurdamar/predatoR: Mutation Impact Prediction Based on Network Properties
View source: R/shortest_path_score.R
shorteset_path_score R Documentation
Shortest Path Score
Description
Calculate Shortest Path Z-Scores of input position
Usage
shorteset_path_score(edge_list, filtered_info_df)
Arguments
edge_list
list contains separate edge data.frames for each chain
filtered_info_df
input data.frame which contain only one PDB entries
Details
This function calculates Shortest Path lengths of all nodes in the network via shortest.paths function
of igraph package. Sum shortest path lengths of every nodes, calculates and returns the Z-Scores of the input positions.
Value
Shortest Path Z-Scores of input position
berkgurdamar/predatoR documentation built on Jan. 10, 2023, 10:51 p.m.
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View source: R/shortest_path_score.R
| shorteset_path_score | R Documentation |
Shortest Path Score
Description
Calculate Shortest Path Z-Scores of input position
Usage
shorteset_path_score(edge_list, filtered_info_df)
Arguments
edge_list |
list contains separate edge data.frames for each chain |
filtered_info_df |
input data.frame which contain only one PDB entries |
Details
This function calculates Shortest Path lengths of all nodes in the network via shortest.paths function
of igraph package. Sum shortest path lengths of every nodes, calculates and returns the Z-Scores of the input positions.
Value
Shortest Path Z-Scores of input position
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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