API for bernatgel/karyoploteR
Plot customizable linear genomes displaying arbitrary data

Global functions
darker Man page Source code
genomic2plot_1HorizDataAboveIdeogram Source code
genomic2plot_2HorizDataAboveAndBelowIdeogram Source code
genomic2plot_3HorizAllChromosomesInOneLine Source code
genomic2plot_4VerticalDataAboveAndBelowIdeogram Source code
getChrHeight_1HorizDataAboveIdeogram Source code
getChrHeight_2HorizDataAboveAndBelowIdeogram Source code
getChrHeight_3HorizAllChromosomesInOneLine Source code
getChrHeight_4VerticalDataAboveAndBelowIdeogram Source code
getChromosomeNamesBoundingBox Man page Source code
getCoordChangeFunctions Source code
getCytobandColors Man page Source code
getCytobands Man page Source code
getDefaultPlotParams Man page Source code
getIdeogramMidY_1HorizDataAboveIdeogram Source code
getIdeogramMidY_2HorizDataAboveAndBelowIdeogram Source code
getIdeogramMidY_3HorizAllChromosomesInOneLine Source code
getIdeogramMidY_4VerticalDataAboveAndBelowIdeogram Source code
getMainTitleBoundingBox Man page Source code
getVariantsColors Man page Source code
kpAbline Man page Source code
kpAddBaseNumbers Man page Source code
kpAddChromosomeNames Man page Source code
kpAddCytobandLabels Man page Source code
kpAddCytobands Man page Source code
kpAddCytobandsAsLine Man page Source code
kpAddLabels Man page Source code
kpAddMainTitle Man page Source code
kpArrows Man page Source code
kpAxis Man page Source code
kpBars Man page Source code
kpDataBackground Man page Source code
kpHeatmap Man page Source code
kpLines Man page Source code
kpPlotBAMDensity Man page Source code
kpPlotCoverage Man page Source code
kpPlotDensity Man page Source code
kpPlotLinks Man page Source code
kpPlotMarkers Man page Source code
kpPlotRainfall Man page Source code
kpPlotRegions Man page Source code
kpPlotRibbon Man page Source code
kpPoints Man page Source code
kpPolygon Man page Source code
kpRect Man page Source code
kpSegments Man page Source code
kpText Man page Source code
lighter Man page Source code
onLoad Source code
plotDefaultPlotParams Man page Source code
plotKaryotype Man page Source code
prepareParameters2 Man page Source code
prepareParameters4 Man page Source code
recycle Source code
recycle.first Source code
bernatgel/karyoploteR documentation built on Sept. 8, 2017, 1:05 p.m.