getTextSize: getTextSize

In bernatgel/karyoploteR: Plot customizable linear genomes displaying arbitrary data

getTextSize

Description

Returns the size of character strings in bases and r's

Usage

getTextSize(karyoplot, labels, cex=1, data.panel="1")

Arguments

karyoplot	(KaryoPlot) A KaryoPlot object representing the current plot
labels	(character) The character strings to measure
cex	(numeric) The cex value used to plot the text (defaults to 1)
data.panel	(data panel identifier) The name of the data panel on which text was plotted. (defaults to "1")

Details

Small utility function to get the size of text labels in usable units for karyoploteR: bases for the width and r's for the height. The r units are the ones passed to r0 and r1 and take into account that a data panel has always total height of 1 r (from r0=0 to r1=1)

Value

Returns a list with two elements: width and height. Each of them is a numeric vector of the same length as "labels" with the width in bases of each label and the height in r units of each label.

Examples

pp <- getDefaultPlotParams(plot.type=2)
pp$data2height <- 50

kp <- plotKaryotype(chromosomes="chr1", plot.type=2, plot.params=pp)
 
label <- "Looooooong label"
kpText(kp, chr="chr1", x=70e6, y=0.5, labels=label)
text.size <- getTextSize(kp, labels=label)
kpRect(kp, chr="chr1", x0=70e6-text.size$width/2, x1=70e6+text.size$width/2,
           y0=0.5-text.size$height/2, y1=0.5+text.size$height/2)
 
label <- "SHORT"
text.size <- getTextSize(kp, labels=label, cex=3)
kpRect(kp, chr="chr1", x0=170e6-text.size$width/2, x1=170e6+text.size$width/2,
           y0=0.2-text.size$height/2, y1=0.2+text.size$height/2, col="gold")
kpText(kp, chr="chr1", x=170e6, y=0.2, labels=label, cex=3)
    
label <- c("two_labels", "in a small data.panel=2")
kpText(kp, chr="chr1", x=c(100e6, 170e6), y=c(0.4, 0.2), labels=label, cex=0.6, data.panel=2)
text.size <- getTextSize(kp, labels=label, cex=0.6, data.panel=2)
kpRect(kp, chr="chr1", x0=c(100e6, 170e6)-text.size$width/2, x1=c(100e6, 170e6)+text.size$width/2,
           y0=c(0.4, 0.2)-text.size$height/2, y1=c(0.4, 0.2)+text.size$height/2, data.panel=2)

    

bernatgel/karyoploteR documentation built on Feb. 1, 2024, 11:48 p.m.