Files in bernatgel/karyoploteR
Plot customizable linear genomes displaying arbitrary data
.Rbuildignore
.codecov.yml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/color.R
R/genes.R
R/getChromosomeColors.R
R/getChromosomeNamesBoundingBox.R
R/getCoordChangeFunctions.R
R/getCytobandColors.R
R/getCytobands.R
R/getDataPanelBoundingBox.R
R/getDefaultPlotParams.R
R/getMainTitleBoundingBox.R
R/getVariantsColors.R
R/kpAbline.R
R/kpAddBaseNumbers.R
R/kpAddChromosomeNames.R
R/kpAddChromosomeSeparators.R
R/kpAddColorRect.R
R/kpAddCytobandLabels.R
R/kpAddCytobands.R
R/kpAddCytobandsAsLine.R
R/kpAddLabels.R
R/kpAddMainTitle.R
R/kpArea.R
R/kpArrows.R
R/kpAxis.R
R/kpBars.R
R/kpDataBackground.R
R/kpHeatmap.R
R/kpLines.R
R/kpPlot2Lines.R
R/kpPlotBAMCoverage.R
R/kpPlotBAMDensity.R
R/kpPlotBigWig.R
R/kpPlotCoverage.R
R/kpPlotDensity.R
R/kpPlotGenes.R
R/kpPlotHorizon.R
R/kpPlotLinks.R
R/kpPlotLoess.R
R/kpPlotManhattan.R
R/kpPlotMarkers.R
R/kpPlotNames.R
R/kpPlotRainfall.R
R/kpPlotRegions.R
R/kpPlotRibbon.R
R/kpPlotTranscripts.R
R/kpPoints.R
R/kpPolygon.R
R/kpRect.R
R/kpSegments.R
R/kpText.R
R/plotDefaultPlotParams.R
R/plotKaryotype.R
R/prepareParameters2.R
R/prepareParameters4.R
R/sysdata.rda
R/text.R
R/utils.R
R/zzz.R
README.md
inst/CITATION
inst/extdata/BRCA.genes.hg19.bw
inst/extdata/BRCA.genes.hg19.txt
man/addGeneNames.Rd
man/autotrack.Rd
man/colByCategory.Rd
man/colByChr.Rd
man/colByRegion.Rd
man/colByValue.Rd
man/darker.Rd
man/filterParams.Rd
man/findIntersections.Rd
man/getChromosomeNamesBoundingBox.Rd
man/getColorSchemas.Rd
man/getCytobandColors.Rd
man/getCytobands.Rd
man/getDataPanelBoundingBox.Rd
man/getDefaultPlotParams.Rd
man/getMainTitleBoundingBox.Rd
man/getTextSize.Rd
man/getVariantsColors.Rd
man/horizonColors.Rd
man/is.color.Rd
man/kpAbline.Rd
man/kpAddBaseNumbers.Rd
man/kpAddChromosomeNames.Rd
man/kpAddChromosomeSeparators.Rd
man/kpAddColorRect.Rd
man/kpAddCytobandLabels.Rd
man/kpAddCytobands.Rd
man/kpAddCytobandsAsLine.Rd
man/kpAddLabels.Rd
man/kpAddMainTitle.Rd
man/kpArea.Rd
man/kpArrows.Rd
man/kpAxis.Rd
man/kpBars.Rd
man/kpDataBackground.Rd
man/kpHeatmap.Rd
man/kpLines.Rd
man/kpPlotBAMCoverage.Rd
man/kpPlotBAMDensity.Rd
man/kpPlotBigWig.Rd
man/kpPlotCoverage.Rd
man/kpPlotDensity.Rd
man/kpPlotGenes.Rd
man/kpPlotHorizon.Rd
man/kpPlotLinks.Rd
man/kpPlotLoess.Rd
man/kpPlotManhattan.Rd
man/kpPlotMarkers.Rd
man/kpPlotNames.Rd
man/kpPlotRainfall.Rd
man/kpPlotRegions.Rd
man/kpPlotRibbon.Rd
man/kpPlotTranscripts.Rd
man/kpPoints.Rd
man/kpPolygon.Rd
man/kpRect.Rd
man/kpSegments.Rd
man/kpText.Rd
man/lighter.Rd
man/makeGenesDataFromTxDb.Rd
man/mergeTranscripts.Rd
man/plotDefaultPlotParams.Rd
man/plotKaryotype.Rd
man/plotPalettes.Rd
man/prepareParameters2.Rd
man/prepareParameters4.Rd
man/processClipping.Rd
man/transparent.Rd
tests/testthat.R
tests/testthat/test_Cytobands.R
tests/testthat/test_colors.R
tests/testthat/test_dataInDataCache.R
tests/testthat/test_plotKaryotype.R
tests/testthat/test_prepareParameters.R
tests/testthat/test_utils.R
vignettes/karyoploteR.Rmd
