getExonDists: Get the closest 3' and 5' exons

In betsig/branchpointer: Prediction of intronic splicing branchpoints

Description

Finds the closest annotated exons from a genomic co-ordinate. Returns the distance to the 3' exon, distance to the 5' exon, ids of the 3' and 5' exon, and if the exons are from the same parent gene

Usage

getExonDists(query, exons, queryType)

Arguments

query	GenomicRangesquery
exons	GenomicRanges containing exon co-ordinates. Should be produced by gtfToExons()
queryType	type of query. "SNP" or "region"

Value

GenomicRanges with distance to the closest 3' and 5' exons, whether these exons are part of the same gene (i.e is the location intronic), and the identifiers for the 3' and 5' exons.

Author(s)

Beth Signal

betsig/branchpointer documentation built on Sept. 27, 2021, 10:31 p.m.