getPPT: Get the best polypyramidine tract

Description Usage Arguments Value Author(s)

View source: R/predictBranchpoints.R

Description

Takes a query genomic sequence, finds all potential polypyramidine tracts (PPTs) between the test site and the annotated 3'exon. Returns the distance to the start of the longest PPT, and its length.

Usage

1

Arguments

attributes

query attributes GenomicRanges

Value

distance to the start of the longest PPT, and its length

Author(s)

Beth Signal


betsig/branchpointer documentation built on Sept. 27, 2021, 10:31 p.m.