explore_transformations | R Documentation |
Explore transformations
explore_transformations(
object,
subgroupvar = "subgroup",
transformations = c("quantnorm", "vsn", "zscore", "invnorm"),
method = "pca",
xdim = 1,
ydim = 2,
...
)
object |
SummarizedExperiment |
subgroupvar |
string |
transformations |
vector |
method |
'pca', 'pls', 'sma', or 'lda' |
xdim |
number (default 1) |
ydim |
number (default 2) |
... |
passed to plot_data |
grid object
file <- system.file('extdata/billing19.proteingroups.txt', package = 'autonomics')
subgroups <- sprintf('%s_STD', c('E00','E01','E02','E05','E15','E30','M00'))
object <- read_maxquant_proteingroups(file, subgroups = subgroups)
explore_transformations(object, transformations = c('quantnorm', 'zscore', 'invnorm'))
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