log2counts: Get/Set log2counts

In bhagwataditya/importomics: Unified statistal Modeling of Omics Data

Get/Set log2counts

Description

Get / Set log2counts matrix

Usage

log2counts(object)

## S4 method for signature 'SummarizedExperiment'
log2counts(object)

log2counts(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,matrix'
log2counts(object) <- value

## S4 replacement method for signature 'SummarizedExperiment,numeric'
log2counts(object) <- value

Arguments

object	SummarizedExperiment
value	log2count matrix (features x samples)

Value

log2count matrix (get) or updated object (set)

Examples

file <- download_data('billing19.rnacounts.txt')
object <- read_rnaseq_counts(file, plot=FALSE)
log2counts(object) <- values(object)
log2counts(object)[1:3, 1:3]

bhagwataditya/importomics documentation built on April 20, 2024, 11:19 p.m.