order_on_p: Order on p

In bhagwataditya/importomics: Unified statistal Modeling of Omics Data

Order on p

Description

Order on p

Usage

order_on_p(
  object,
  fit = autonomics::fits(fdt(object)),
  coefs = autonomics::coefs(fdt(object), fit = fit),
  combiner = "|",
  verbose = TRUE
)

order_on_effect(
  object,
  fit = autonomics::fits(fdt(object)),
  coefs = autonomics::coefs(fdt(object), fit = fit),
  combiner = "|",
  verbose = TRUE
)

Arguments

object	SummarizedExperiment
fit	string vector: subset of 'fits(fdt(object))'
coefs	string vector: subset of 'coefs(fdt(object))'
combiner	'|' or '&'
verbose	TRUE or FALSE

Value

SummarizedExperiment

Examples

# Read
  file <- system.file('extdata/atkin.metabolon.xlsx', package = 'autonomics')
  object <- read_metabolon(file)
  order_on_p(object)
  order_on_p(fit_limma(object), coefs = c('t1', 't2', 't3'))

bhagwataditya/importomics documentation built on May 1, 2024, 2:01 a.m.