plot_data: Plot data

In bhagwataditya/importomics: Unified Statistical Modeling of Omics Data

Plot data

Description

Plot data

Usage

plot_data(
  data,
  geom = geom_point,
  color = NULL,
  fill = NULL,
  linetype = NULL,
  ...,
  palette = NULL,
  fixed = list(),
  theme = list()
)

Arguments

data	data.frame'
geom	geom_point, etc.
color	variable mapped to color (symbol)
fill	variable mapped to fill (symbol)
linetype	variable mapped to linetype (symbol)
...	mapped aesthetics
palette	color palette (named character vector)
fixed	fixed aesthetics (list)
theme	list with ggplot theme specifications

Value

ggplot object

Author(s)

Aditya Bhagwat, Johannes Graumann

Examples

file <- system.file('extdata/atkin.metabolon.xlsx', package = 'autonomics')
object <- read_metabolon(file)
object %<>% pca()
data <- sdt(object)
plot_data(data, x = `effect~sample_id~pca1`, y = `effect~sample_id~pca2`)
plot_data(data, x = `effect~sample_id~pca1`, y = `effect~sample_id~pca2`, color = subgroup)
plot_data(data, x = `effect~sample_id~pca1`, y = `effect~sample_id~pca2`, color = NULL)
fixed <- list(shape = 15, size = 3)
plot_data(data, x = `effect~sample_id~pca1`, y = `effect~sample_id~pca2`, fixed = fixed)

bhagwataditya/importomics documentation built on Nov. 28, 2024, 8:28 a.m.