summarize_fit: Summarize fit

In bhagwataditya/importomics: Unified Statistical Modeling of Omics Data

Summarize fit

Description

Summarize fit

Usage

summarize_fit(object, ...)

## S3 method for class 'data.table'
summarize_fit(
  object,
  fit = fits(object),
  coefs = autonomics::coefs(object, fit = fit),
  ...
)

## S3 method for class 'SummarizedExperiment'
summarize_fit(
  object,
  fit = fits(object),
  coefs = autonomics::coefs(object, fit = fit),
  ...
)

Arguments

object	SummarizedExperiment or data.table
...	S3 dispatch
fit	'limma', 'lme', 'lm', 'lme', 'wilcoxon' or NULL
coefs	string vector

Value

data.table(contrast, nup, ndown)

Examples

file <- system.file('extdata/atkin.metabolon.xlsx', package = 'autonomics')
object <- read_metabolon(file)
object %<>% fit_limma()
object %<>% fit_lm()
summarize_fit(object, coefs = c('t1-t0', 't2-t0', 't3-t0'))

bhagwataditya/importomics documentation built on Nov. 28, 2024, 8:28 a.m.