calculateError: Find errors in estimated proportion matrix and signature
In bhattacharya-a-bt/DeCompress: Tissue compartment deconvolution for targeted RNA panels
Description
Usage
Arguments
Value
View source: R/calculateError.R
Description
The function finds the error in a DeCompress-esimated proportion
and signature matrix using either known cell-type proportions or
the total gene expression matrix
Usage
1
calculateError(estProp, estSig, trueProp = NULL, yref)
Arguments
estProp
matrix, numeric expression matrix of compartment proportions
estSig
matrix, numeric matrix of compartment gene signatures
trueProp
matrix, known proportion matrix, NULL if not known
yref
matrix, numeric matrix of original expression matrix
Value
reconstruction MSE
bhattacharya-a-bt/DeCompress documentation built on March 28, 2021, 3:52 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/calculateError.R
Description
The function finds the error in a DeCompress-esimated proportion and signature matrix using either known cell-type proportions or the total gene expression matrix
Usage
1 | calculateError(estProp, estSig, trueProp = NULL, yref)
|
Arguments
estProp |
matrix, numeric expression matrix of compartment proportions |
estSig |
matrix, numeric matrix of compartment gene signatures |
trueProp |
matrix, known proportion matrix, NULL if not known |
yref |
matrix, numeric matrix of original expression matrix |
Value
reconstruction MSE
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.