findInformSet: Select the compartment specific genes

In bhattacharya-a-bt/DeCompress: Tissue compartment deconvolution for targeted RNA panels

Description

The function feature selects the compartment specific genes from the reference expression matrix

Usage

findInformSet(
  yref,
  method = c("variance", "linearity"),
  n_genes = 1000,
  n.types = NULL,
  scree = "cumvar"
)

Arguments

yref	matrix, numeric expression matrix
method	character, variance/linearity for TOAST or LINSEED
n_genes	integer, number of CTS genes needed
n.types	integer, number of compartments
scree	character, method to estimate n.types

Value

numeric matrix of n_genes CTS genes

bhattacharya-a-bt/DeCompress documentation built on March 28, 2021, 3:52 a.m.