estimateUnmix: Run unmix from DESeq2

In bhattacharya-a-bt/DeCompress: Tissue compartment deconvolution for targeted RNA panels

Description

The function estimates the compartment proportions from an estimated signature matrix using unmix

Usage

estimateUnmix(yref, sigs, shift.range = 10^(1:10), logTransform = F)

Arguments

yref	matrix, numeric expression matrix
sigs	matrix, numeric expression compartment-specific sig matrix
shift.range	vector, numeric vector for gene expression shifts
logTransform	logical, T/F to logTransform data, defaults to F

Value

list with cell-type proportions and expression profiles

bhattacharya-a-bt/DeCompress documentation built on March 28, 2021, 3:52 a.m.