mseError: Select the number of cell types using SVD methods
In bhattacharya-a-bt/DeCompress: Tissue compartment deconvolution for targeted RNA panels
Description
Usage
Arguments
Value
Description
The function estimates the number of cell-types using one
of three SVD methods on the input expression matrix
Usage
1
mseError(mat1, mat2, rand = F, r2 = F)
Arguments
mat1
matrix, numeric matrix of proportions
mat2
matrix, numeric matrix of proportions
rand
logical, T/F to shuffle columns of mat2
Value
number of cell types
bhattacharya-a-bt/DeCompress documentation built on March 28, 2021, 3:52 a.m.
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Description Usage Arguments Value
Description
The function estimates the number of cell-types using one of three SVD methods on the input expression matrix
Usage
1 | mseError(mat1, mat2, rand = F, r2 = F)
|
Arguments
mat1 |
matrix, numeric matrix of proportions |
mat2 |
matrix, numeric matrix of proportions |
rand |
logical, T/F to shuffle columns of mat2 |
Value
number of cell types
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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