trainCS_gene: Wrapper to train compression matrix

In bhattacharya-a-bt/DeCompress: Tissue compartment deconvolution for targeted RNA panels

Description

The function estimates the best set of coefficients for a given gene from the target genes.

Usage

trainCS_gene(
  need,
  train,
  seed,
  method = c("lar", "lasso", "enet", "ridge", "l1", "TV", "l2"),
  n.cores,
  lambda = 0.1
)

Arguments

need	vector, numeric expression vector for a needed gene
train	matrix, numeric expression matrix for target genes
seed	numeric, random seed
method	vector, character vector of optimization methods
n.cores	numeric, number of cores
lambda	numeric, penalty paramemter for non-linear optimization
par	logical, T/F for parallelization

Value

list with coefficients and predictive R2

bhattacharya-a-bt/DeCompress documentation built on March 28, 2021, 3:52 a.m.