API for bhklab/AnnotationGx
AnnotationGx: A package for building, updating and querying an annotation database for pharmaco-genomic data

Global functions
.asDT Source code
.buildURL Source code
.build_cellosaurus_request Source code
.build_chembl_request Source code
.build_pubchem_request Source code
.build_pubchem_rest_query Source code
.build_pubchem_view_query Source code
.build_request Source code
.build_unichem_compound_req Source code
.build_unichem_query Source code
.cellosaurus_extResources Source code
.cellosaurus_schema Source code
.checkThrottlingStatus2 Source code
.chembl_filter_types Source code
.chembl_mechanism_cols Source code
.chembl_resource_schema Source code
.chembl_resources Source code
.clean_parsed_annotation Source code
.convert_nested_list_to_dt Source code
.create_cellosaurus_queries Source code
.debug Source code
.err Source code
.find_cellosaurus_matches Source code
.formatComments Source code
.formatSynonyms Source code
.funContext Source code
.getRequestOncotree Source code
.get_all_heading_types_base Source code
.info Source code
.log_fmt Source code
.parseATCresponse Source code
.parseCASresponse Source code
.parseCHEMBLresponse Source code
.parseDILIresponse Source code
.parseNSCresponse Source code
.parseQueryToDT Source code
.parse_cellosaurus_lines Source code
.parse_cellosaurus_text Source code
.parse_pubchem_rest_responses Source code
.parse_resp_json Source code
.parse_resp_tsv Source code
.parse_throttling_message Source code
.perform_request Source code
.perform_request_parallel Source code
.processEntry Source code
.replace_null Source code
.splitCol Source code
.splitNestedCol Source code
.split_cellosaurus_lines Source code
.strSplitFinite Source code
.strSplitInfinite Source code
.warn Source code
AnnotationGx Man page
AnnotationGx-package Man page
AttributeInfo Man page
AttributeSet Man page
BioMartClient Man page
CCLE_sampleMetadata Man page
CCLE_treatmentMetadata Man page
CTRP_sampleMetadata Man page
CTRP_treatmentMetadata Man page
DatasetInfo Man page
FilterInfo Man page
GDSC_sampleMetadata Man page
GDSC_treatmentMetadata Man page
MartInfo Man page
`matchNested,data.frame` Source code
`matchNested,data.table` Source code
`matchNested,list` Source code
annotateCellAccession Man page Source code
annotatePubchemCompound Man page Source code
bm_query_builder Man page Source code
cellosaurusAPIVersion Man page Source code
cellosaurus_fields Man page Source code
cleanCharacterStrings Man page Source code
gCSI_sampleMetadata Man page
gCSI_treatmentMetadata Man page
getChemblFilterTypes Man page Source code
getChemblMechanism Man page Source code
getChemblResourceFields Man page Source code
getChemblResources Man page Source code
getOncotreeMainTypes Man page Source code
getOncotreeTumorTypes Man page Source code
getOncotreeVersions Man page Source code
getPubchemAnnotationHeadings Man page Source code
getPubchemCompound Man page Source code
getPubchemProperties Man page Source code
getPubchemStatus Man page Source code
getUnichemSources Man page Source code
mapCID2Properties Man page Source code
mapCell2Accession Man page Source code
mapCompound2CID Man page Source code
matchNested Man page
matchNested,character,data.frame-method Man page
matchNested,character,data.table-method Man page
matchNested,character,list-method Man page
matchNested,numeric,data.table-method Man page
matchNested,numeric,list-method Man page
queryChemblAPI Man page Source code
queryUnichemCompound Man page Source code
query_hgnc_by_genes Man page Source code
standardize_names Man page Source code
strSplit Man page Source code
unlistNested Man page Source code
bhklab/AnnotationGx documentation built on April 3, 2025, 4:27 p.m.