API for bhklab/AnnotationGx
AnnotationGx: A package for building, updating and querying an annotation database for pharmaco-genomic data
| Global functions | |
|---|---|
| .asDT | Source code |
| .buildURL | Source code |
| .build_cellosaurus_request | Source code |
| .build_chembl_request | Source code |
| .build_pubchem_request | Source code |
| .build_pubchem_rest_query | Source code |
| .build_pubchem_view_query | Source code |
| .build_request | Source code |
| .build_unichem_compound_req | Source code |
| .build_unichem_query | Source code |
| .cellosaurus_extResources | Source code |
| .cellosaurus_schema | Source code |
| .checkThrottlingStatus2 | Source code |
| .chembl_filter_types | Source code |
| .chembl_mechanism_cols | Source code |
| .chembl_resource_schema | Source code |
| .chembl_resources | Source code |
| .clean_parsed_annotation | Source code |
| .convert_nested_list_to_dt | Source code |
| .create_cellosaurus_queries | Source code |
| .debug | Source code |
| .err | Source code |
| .find_cellosaurus_matches | Source code |
| .formatComments | Source code |
| .formatSynonyms | Source code |
| .funContext | Source code |
| .getRequestOncotree | Source code |
| .get_all_heading_types_base | Source code |
| .info | Source code |
| .log_fmt | Source code |
| .parseATCresponse | Source code |
| .parseCASresponse | Source code |
| .parseCHEMBLresponse | Source code |
| .parseDILIresponse | Source code |
| .parseNSCresponse | Source code |
| .parseQueryToDT | Source code |
| .parse_cellosaurus_lines | Source code |
| .parse_cellosaurus_text | Source code |
| .parse_pubchem_rest_responses | Source code |
| .parse_resp_json | Source code |
| .parse_resp_tsv | Source code |
| .parse_throttling_message | Source code |
| .perform_request | Source code |
| .perform_request_parallel | Source code |
| .processEntry | Source code |
| .replace_null | Source code |
| .splitCol | Source code |
| .splitNestedCol | Source code |
| .split_cellosaurus_lines | Source code |
| .strSplitFinite | Source code |
| .strSplitInfinite | Source code |
| .warn | Source code |
| AnnotationGx | Man page |
| AnnotationGx-package | Man page |
| AttributeInfo | Man page |
| AttributeSet | Man page |
| BioMartClient | Man page |
| CCLE_sampleMetadata | Man page |
| CCLE_treatmentMetadata | Man page |
| CTRP_sampleMetadata | Man page |
| CTRP_treatmentMetadata | Man page |
| DatasetInfo | Man page |
| FilterInfo | Man page |
| GDSC_sampleMetadata | Man page |
| GDSC_treatmentMetadata | Man page |
| MartInfo | Man page |
| `matchNested,data.frame` | Source code |
| `matchNested,data.table` | Source code |
| `matchNested,list` | Source code |
| annotateCellAccession | Man page Source code |
| annotatePubchemCompound | Man page Source code |
| bm_query_builder | Man page Source code |
| cellosaurusAPIVersion | Man page Source code |
| cellosaurus_fields | Man page Source code |
| cleanCharacterStrings | Man page Source code |
| gCSI_sampleMetadata | Man page |
| gCSI_treatmentMetadata | Man page |
| getChemblFilterTypes | Man page Source code |
| getChemblMechanism | Man page Source code |
| getChemblResourceFields | Man page Source code |
| getChemblResources | Man page Source code |
| getOncotreeMainTypes | Man page Source code |
| getOncotreeTumorTypes | Man page Source code |
| getOncotreeVersions | Man page Source code |
| getPubchemAnnotationHeadings | Man page Source code |
| getPubchemCompound | Man page Source code |
| getPubchemProperties | Man page Source code |
| getPubchemStatus | Man page Source code |
| getUnichemSources | Man page Source code |
| mapCID2Properties | Man page Source code |
| mapCell2Accession | Man page Source code |
| mapCompound2CID | Man page Source code |
| matchNested | Man page |
| matchNested,character,data.frame-method | Man page |
| matchNested,character,data.table-method | Man page |
| matchNested,character,list-method | Man page |
| matchNested,numeric,data.table-method | Man page |
| matchNested,numeric,list-method | Man page |
| queryChemblAPI | Man page Source code |
| queryUnichemCompound | Man page Source code |
| query_hgnc_by_genes | Man page Source code |
| standardize_names | Man page Source code |
| strSplit | Man page Source code |
| unlistNested | Man page Source code |
