mapCell2Accession: Map Cell Line IDs to Accession Numbers

In bhklab/AnnotationGx: AnnotationGx: A package for building, updating and querying an annotation database for pharmaco-genomic data

Map Cell Line IDs to Accession Numbers

Description

This function maps cell line IDs to accession numbers using the Cellosaurus database.

Usage

mapCell2Accession(
  ids,
  numResults = 10000,
  from = "idsy",
  sort = "ac",
  keep_duplicates = FALSE,
  fuzzy = FALSE,
  query_only = FALSE,
  raw = FALSE,
  parsed = TRUE,
  ...
)

Arguments

ids	A character vector of cell line IDs.
numResults	The maximum number of results to return for each query. Default is 1000.
from	The type of input IDs. Possible values are "idsy" (default), "ac", "id", "sy", and "misspelling".
sort	The sorting order of the results. Possible values are "ac" (default), "id", "sy", and "misspelling".
keep_duplicates	Logical indicating whether to keep duplicate results. Default is FALSE.
fuzzy	Logical indicating whether to perform a fuzzy search. Default is FALSE.
query_only	Logical indicating whether to return only the query URLs. Default is FALSE.
raw	Logical indicating whether to return the raw HTTP responses. Default is FALSE.
parsed	Logical indicating whether to parse the response text. Default is TRUE.
...	Additional arguments to be passed to the underlying functions.

Value

A data.table containing the mapped cell line IDs and accession numbers.

Examples

mapCell2Accession(ids = c("A549", "MCF7"))

bhklab/AnnotationGx documentation built on April 3, 2025, 4:27 p.m.