bm_query_builder: Build BioMart Query XML

In bhklab/AnnotationGx: AnnotationGx: A package for building, updating and querying an annotation database for pharmaco-genomic data

Build BioMart Query XML

Description

Build BioMart Query XML

Usage

bm_query_builder(
  dataset,
  filters = list(),
  attributes = character(),
  client_name = "biomartclient",
  processor = "TSV",
  header = TRUE,
  limit = -1
)

Arguments

dataset	A DatasetInfo object representing the BioMart dataset to query
filters	List of filters, either: Named list where names are filter names and values are filter values List of FilterInfo objects with added 'value' field
attributes	AttributeSet, list of AttributeInfo objects, or character vector specifying the attributes to retrieve
client_name	Character, name of client for query identification (default: "biomartclient")
processor	Character, output format processor type (default: "TSV")
header	Logical, whether to include header row in results (default: TRUE)
limit	Integer, maximum number of rows to return, -1 for unlimited (default: -1)

Value

Character string containing the formatted XML BioMart query

bhklab/AnnotationGx documentation built on April 3, 2025, 4:27 p.m.