annotateCellAccession: Annotate Cell Accession

In bhklab/AnnotationGx: AnnotationGx: A package for building, updating and querying an annotation database for pharmaco-genomic data

Annotate Cell Accession

Description

This function takes a Cellosaurus accession and returns annotations for the cell line.

Usage

annotateCellAccession(
  accessions,
  to = c("id", "ac", "hi", "sy", "ca", "sx", "ag", "di", "derived-from-site",
    "misspelling", "dt"),
  query_only = FALSE,
  raw = FALSE
)

Arguments

accessions	The Cellosaurus accession to annotate.
to	A character vector specifying the types of annotations to retrieve. Possible values include "id", "ac", "hi", "sy", "ca", "sx", "ag", "di", "derived-from-site", "misspelling", and "dt".
query_only	A logical value indicating whether to only return the query string.
raw	A logical value indicating whether to return the raw response.

Value

A data frame containing the annotations for the cell line.

Examples

annotateCellAccession("CVCL_0031")
annotateCellAccession("CVCL_0031", to = c("id", "ac", "hi", "sy"))

bhklab/AnnotationGx documentation built on April 3, 2025, 4:27 p.m.