AttributeSet: BioMart Attribute Set Class

In bhklab/AnnotationGx: AnnotationGx: A package for building, updating and querying an annotation database for pharmaco-genomic data

BioMart Attribute Set Class

Description

Represents a set of attributes from a BioMart dataset.

Public fields

attributes

List of AttributeInfo objects

Methods

Public methods

• AttributeSet$new()

• AttributeSet$get_by_display_name()

• AttributeSet$print()

• AttributeSet$as.list()

• AttributeSet$filter()

• AttributeSet$clone()

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Method new()

Initialize a new AttributeSet object

Usage

AttributeSet$new(attributes)

Arguments

attributes

List of AttributeInfo objects

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Method get_by_display_name()

Usage

AttributeSet$get_by_display_name(display_names)

Arguments

display_names

Character vector of display names

Returns

List of matching AttributeInfo objects

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Method print()

Print method for AttributeSet objects

Usage

AttributeSet$print(...)

Arguments

...

Additional arguments passed to print methods (not used)

Returns

Invisibly returns self

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Method as.list()

Convert AttributeSet to list

Usage

AttributeSet$as.list()

Returns

List of attributes DisplayName as strings

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Method filter()

Filter attributes based on regex pattern

Usage

AttributeSet$filter(pattern, exclude = FALSE)

Arguments

pattern

Regular expression pattern to match against display names

exclude

Logical, if TRUE excludes matching patterns, if FALSE includes them

Returns

A new AttributeSet with filtered attributes

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Method clone()

The objects of this class are cloneable with this method.

Usage

AttributeSet$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

bhklab/AnnotationGx documentation built on April 3, 2025, 4:27 p.m.