Man pages for bhklab/AnnotationGx
AnnotationGx: A package for building, updating and querying an annotation database for pharmaco-genomic data
| annotateCellAccession | Annotate Cell Accession |
| annotatePubchemCompound | Annotate PubChem Compound |
| AnnotationGx-package | AnnotationGx: AnnotationGx: A package for building, updating... |
| AttributeInfo | BioMart Attribute Information Class |
| AttributeSet | BioMart Attribute Set Class |
| BioMartClient | BioMart API Client |
| bm_query_builder | Build BioMart Query XML |
| CCLE_sampleMetadata | CCLE_sampleMetadata is some preprocessed sample metadata from... |
| CCLE_treatmentMetadata | CCLE_treatmentMetadata is some preprocessed treatment... |
| cellosaurusAPIVersion | Get the Cellosaurus API version |
| cellosaurus_fields | Get the list of fields in the Cellosaurus schema |
| cleanCharacterStrings | Clean character strings by removing special characters and... |
| CTRP_sampleMetadata | CTRP_sampleMetadata is some preprocessed sample metadata from... |
| CTRP_treatmentMetadata | CTRP_treatmentMetadata is some preprocessed treatment... |
| DatasetInfo | BioMart Dataset Information Class |
| FilterInfo | BioMart Filter Information Class |
| gCSI_sampleMetadata | gCSI_sampleMetadata is some preprocessed sample metadata from... |
| gCSI_treatmentMetadata | gCSI_treatmentMetadata is some preprocessed treatment... |
| GDSC_sampleMetadata | gdsc_sampleMetadata is some preprocessed sample metadata from... |
| GDSC_treatmentMetadata | GDSC_treatmentMetadata is some preprocessed treatment... |
| getChemblFilterTypes | Get the Chembl filter types |
| getChemblMechanism | Get ChEMBL Mechanism |
| getChemblResourceFields | Get the fields of a Chembl resource |
| getChemblResources | getChemblResources function |
| getOncotreeMainTypes | Get the main types from the Oncotree database. |
| getOncotreeTumorTypes | Get the tumor types from the Oncotree database. |
| getOncotreeVersions | Get available Oncotree versions |
| getPubchemAnnotationHeadings | Get annotation headings (name only) based on type and heading... |
| getPubchemCompound | Retrieve PubChem compound information |
| getPubchemProperties | Retrieves the PubChem XML schema and extracts property... |
| getPubchemStatus | Retrieves the status of a PubChem request |
| getUnichemSources | Get the list of sources in UniChem. |
| mapCell2Accession | Map Cell Line IDs to Accession Numbers |
| mapCID2Properties | Map PubChem Compound IDs to Properties |
| mapCompound2CID | Map compound names to PubChem CIDs |
| MartInfo | BioMart Information Class |
| matchNested | Match inside nested elements |
| queryChemblAPI | Query the ChEMBL API |
| query_hgnc_by_genes | Query HGNC BioMart by Gene Symbols |
| queryUnichemCompound | Query UniChem for a compound. |
| standardize_names | Standardize Names |
| strSplit | Split a character vector into a matrix based on a delimiter |
| unlistNested | Unlists a nested list and removes NA values and duplicates. |
