annotateCellAccession | Annotate Cell Accession |
annotatePubchemCompound | Annotate PubChem Compound |
AnnotationGx-package | AnnotationGx: AnnotationGx: A package for building, updating... |
AttributeInfo | BioMart Attribute Information Class |
AttributeSet | BioMart Attribute Set Class |
BioMartClient | BioMart API Client |
bm_query_builder | Build BioMart Query XML |
CCLE_sampleMetadata | CCLE_sampleMetadata is some preprocessed sample metadata from... |
CCLE_treatmentMetadata | CCLE_treatmentMetadata is some preprocessed treatment... |
cellosaurusAPIVersion | Get the Cellosaurus API version |
cellosaurus_fields | Get the list of fields in the Cellosaurus schema |
cleanCharacterStrings | Clean character strings by removing special characters and... |
CTRP_sampleMetadata | CTRP_sampleMetadata is some preprocessed sample metadata from... |
CTRP_treatmentMetadata | CTRP_treatmentMetadata is some preprocessed treatment... |
DatasetInfo | BioMart Dataset Information Class |
FilterInfo | BioMart Filter Information Class |
gCSI_sampleMetadata | gCSI_sampleMetadata is some preprocessed sample metadata from... |
gCSI_treatmentMetadata | gCSI_treatmentMetadata is some preprocessed treatment... |
GDSC_sampleMetadata | gdsc_sampleMetadata is some preprocessed sample metadata from... |
GDSC_treatmentMetadata | GDSC_treatmentMetadata is some preprocessed treatment... |
getChemblFilterTypes | Get the Chembl filter types |
getChemblMechanism | Get ChEMBL Mechanism |
getChemblResourceFields | Get the fields of a Chembl resource |
getChemblResources | getChemblResources function |
getOncotreeMainTypes | Get the main types from the Oncotree database. |
getOncotreeTumorTypes | Get the tumor types from the Oncotree database. |
getOncotreeVersions | Get available Oncotree versions |
getPubchemAnnotationHeadings | Get annotation headings (name only) based on type and heading... |
getPubchemCompound | Retrieve PubChem compound information |
getPubchemProperties | Retrieves the PubChem XML schema and extracts property... |
getPubchemStatus | Retrieves the status of a PubChem request |
getUnichemSources | Get the list of sources in UniChem. |
mapCell2Accession | Map Cell Line IDs to Accession Numbers |
mapCID2Properties | Map PubChem Compound IDs to Properties |
mapCompound2CID | Map compound names to PubChem CIDs |
MartInfo | BioMart Information Class |
matchNested | Match inside nested elements |
queryChemblAPI | Query the ChEMBL API |
query_hgnc_by_genes | Query HGNC BioMart by Gene Symbols |
queryUnichemCompound | Query UniChem for a compound. |
standardize_names | Standardize Names |
strSplit | Split a character vector into a matrix based on a delimiter |
unlistNested | Unlists a nested list and removes NA values and duplicates. |
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