API for bimberlabinternal/RIRA_classification
A package for the Rhesus Immune Reference Atlas (RIRA): A multi-tissue single-cell landscape of immune cells
| Global functions | |
|---|---|
| .DropLowCountClasses | Source code |
| .FilterLowCalls | Source code |
| .FindGeneSetsContaining | Source code |
| .FindPlotableFeatures | Source code |
| .GetSavedComponent | Source code |
| .HasNormalizationBeenPerformed | Source code |
| .InferBpParam | Source code |
| .ParseMetricsFile | Source code |
| .PlotUCellScores | Source code |
| .RegisterGeneSet | Source code |
| .RemoveUnchangedOrZero | Source code |
| .ResolveModel | Source code |
| .SplitCellsIntoBatches | Source code |
| AssignCellType | Man page Source code |
| CalculateUCellScores | Man page Source code |
| Classify_ImmuneCells | Man page |
| Classify_Myeloid | Man page |
| Classify_TNK | Man page |
| DownloadFromGEO | Man page Source code |
| ExpandGeneList | Man page Source code |
| ExtractGeneWeights | Man page Source code |
| FilterDisallowedClasses | Man page |
| GetAvailableScGates | Man page Source code |
| GetGeneSet | Man page Source code |
| GetMMul10IgGenes | Man page Source code |
| GetMMul10TcrGenes | Man page Source code |
| GetScGateModel | Man page Source code |
| GetSeed | Man page Source code |
| InterpretModels | Man page Source code |
| ListGeneSets | Man page Source code |
| MakePhenotypingDotPlot | Man page Source code |
| PlotImmuneMarkers | Man page Source code |
| PlotMarkerSeries | Man page Source code |
| PlotMarkerSet | Source code |
| PlotUcellCorrelation | Man page Source code |
| PredictCellTypeProbability | Man page Source code |
| RunCellTypist | Man page Source code |
| RunScGate | Man page Source code |
| RunScGateForModels | Man page Source code |
| RunScGateWithDefaultModels | Man page Source code |
| RunScGateWithRhesusModels | Man page Source code |
| ScoreCellsWithSavedModel | Man page Source code |
| ScoreUsingSavedComponent | Man page Source code |
| SetSeed | Man page Source code |
| SeuratToMatrix | Source code |
| TrainCellTypist | Man page |
| TrainModel | Man page Source code |
| TrainModelsFromSeurat | Man page Source code |
