ScoreUsingSavedComponent: ScoreUsingSavedComponent
In bimberlabinternal/RIRA_classification: A package for the Rhesus Immune Reference Atlas (RIRA): A multi-tissue single-cell landscape of immune cells
View source: R/ComponentScores.R
ScoreUsingSavedComponent R Documentation
ScoreUsingSavedComponent
Description
Scores a seurat object using the gene weights from a saved component
Usage
ScoreUsingSavedComponent(
seuratObj,
componentOrName,
fieldName,
assayName = "RNA"
)
Arguments
seuratObj
The seurat object
componentOrName
Either a data frame with the columns 'feature' and 'weight', or the name of a previously saved component available in RIRA
fieldName
The name of the field in which to save the resulting scores
assayName
The assay to use
bimberlabinternal/RIRA_classification documentation built on April 14, 2025, 5:59 p.m.
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View source: R/ComponentScores.R
| ScoreUsingSavedComponent | R Documentation |
ScoreUsingSavedComponent
Description
Scores a seurat object using the gene weights from a saved component
Usage
ScoreUsingSavedComponent(
seuratObj,
componentOrName,
fieldName,
assayName = "RNA"
)
Arguments
seuratObj |
The seurat object |
componentOrName |
Either a data frame with the columns 'feature' and 'weight', or the name of a previously saved component available in RIRA |
fieldName |
The name of the field in which to save the resulting scores |
assayName |
The assay to use |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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