ExtractGeneWeights: ExtractGeneWeights
In bimberlabinternal/RIRA_classification: A package for the Rhesus Immune Reference Atlas (RIRA): A multi-tissue single-cell landscape of immune cells
View source: R/ComponentScores.R
ExtractGeneWeights R Documentation
ExtractGeneWeights
Description
Extracts the loadings from a given component in a seurat object and returns a data.frame suitable for ScoreUsingSavedComponent
Usage
ExtractGeneWeights(
seuratObj,
componentNum,
topNGenes = 100,
bottomNGenes = 100,
reduction = "pca"
)
Arguments
seuratObj
The seurat object
componentNum
The component number to use
topNGenes
The number of top genes to use (ranked by loading)
bottomNGenes
The number of bottom genes to use (ranked by loading)
reduction
The reduction to use
bimberlabinternal/RIRA_classification documentation built on April 14, 2025, 5:59 p.m.
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View source: R/ComponentScores.R
| ExtractGeneWeights | R Documentation |
ExtractGeneWeights
Description
Extracts the loadings from a given component in a seurat object and returns a data.frame suitable for ScoreUsingSavedComponent
Usage
ExtractGeneWeights(
seuratObj,
componentNum,
topNGenes = 100,
bottomNGenes = 100,
reduction = "pca"
)
Arguments
seuratObj |
The seurat object |
componentNum |
The component number to use |
topNGenes |
The number of top genes to use (ranked by loading) |
bottomNGenes |
The number of bottom genes to use (ranked by loading) |
reduction |
The reduction to use |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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