AssignCellType: Assigns celltype label based on probabilities in the metadata

In bimberlabinternal/RIRA_classification: A package for the Rhesus Immune Reference Atlas (RIRA): A multi-tissue single-cell landscape of immune cells

Assigns celltype label based on probabilities in the metadata

Description

Assigns celltype label based on probabilities in the metadata

Usage

AssignCellType(
  seuratObj,
  probabilityColumns,
  fieldName = "RIRA_Consensus",
  minimum_probability = 0.5,
  minimum_delta = 0.25
)

Arguments

seuratObj	The Seurat Object to be updated
probabilityColumns	The set of columns containing probabilities for each classifier to include
fieldName	The name of the metadata column to store the result
minimum_probability	The minimum probability for a confident cell type assignment
minimum_delta	The minimum difference in probabilities necessary to call one celltype over another.

bimberlabinternal/RIRA_classification documentation built on April 14, 2025, 5:59 p.m.