summarizeBootstraps: Summarize the bootstrap compartment estimates and compute...
In biobenkj/compartmap: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq
View source: R/summarizeBootstraps.R
summarizeBootstraps R Documentation
Summarize the bootstrap compartment estimates and compute Agresti-Coull confidence intervals
Description
Summarize the bootstrap compartment estimates and compute Agresti-Coull confidence intervals
Usage
summarizeBootstraps(boot.list, est.ab, q = 0.95, assay = c("rna", "atac"))
Arguments
boot.list
List of bootstraps as GRanges objects
est.ab
The original compartment calls
q
Confidence interval to compute (0.95 for 95 percent CI)
assay
Type of assay we are working with
Value
A GRanges object with bootstraps summarized
biobenkj/compartmap documentation built on Oct. 18, 2023, 11:11 a.m.
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View source: R/summarizeBootstraps.R
| summarizeBootstraps | R Documentation |
Summarize the bootstrap compartment estimates and compute Agresti-Coull confidence intervals
Description
Summarize the bootstrap compartment estimates and compute Agresti-Coull confidence intervals
Usage
summarizeBootstraps(boot.list, est.ab, q = 0.95, assay = c("rna", "atac"))
Arguments
boot.list |
List of bootstraps as GRanges objects |
est.ab |
The original compartment calls |
q |
Confidence interval to compute (0.95 for 95 percent CI) |
assay |
Type of assay we are working with |
Value
A GRanges object with bootstraps summarized
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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