Man pages for bioinfo00/xnnet0
Explainable neural network classification
| annotation_libraries | Annotation libraries |
| assess_xnnet_performance | Assessing performance of xnnet predictions given labels |
| build_xnnet | Building xnnet |
| compute_activation | Computing activation state of hidden nodes |
| get_and_process_GSEA_results | Renormalize NES produced by GSEA |
| get_GSEA_results | Gene Set Enrichment Analysis (GSEA) |
| get_limma_results | Differential gene expression |
| GSE37250 | Transcriptomics data from active vs latent tuberculosis... |
| plot_xnnet | Plot xxnet structure |
| plot_xnnet_heatmap | Plot xxnet results as a heatmap |
| plot_xnnet_input_genes | Plot xxnet results as a heatmap |
| reduce_GSEA_results | Reducing GSEA results with Weighted Set Cover |
| renormalize_NES | Renormalize NES produced by GSEA This function renormalizes... |
| select_xnnet_nodes | Defining xnnet nodes |
| threshold_scaled_data | Predict sample labels using xnnet |
| train_test_split | Splitting data in training and test set |
| xnnet_predict | Generating xnnet predictions on a set of samples |
