renormalize_NES: Renormalize NES produced by GSEA This function renormalizes...
In bioinfo00/xnnet0: Explainable neural network classification
View source: R/xnnet_functions_v0.1.R
Description
Renormalize NES produced by GSEA
This function renormalizes the NES from different libraries by regressing
out effects related to the specific library and to the size of the gene set.
The renormalized NES can be then compared across libraries and gene sets of
different sizes
Usage
1
renormalize_NES(GSEA_results)
Arguments
GSEA_results
list of GSEA output, each element corresponding to the
GSEA output for a specific annotation library
bioinfo00/xnnet0 documentation built on Sept. 16, 2020, 8:22 a.m.
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View source: R/xnnet_functions_v0.1.R
Description
Renormalize NES produced by GSEA This function renormalizes the NES from different libraries by regressing out effects related to the specific library and to the size of the gene set. The renormalized NES can be then compared across libraries and gene sets of different sizes
Usage
1 | renormalize_NES(GSEA_results)
|
Arguments
GSEA_results |
list of GSEA output, each element corresponding to the GSEA output for a specific annotation library |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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