get_limma_results: Differential gene expression

In bioinfo00/xnnet0: Explainable neural network classification

Description

This function performs differential gene expression with Limma. To avoid data leackage, this analysis is applied only to the training data

Usage

get_limma_results(X, y, adj_pval_cutoff = 0.05)

Arguments

X	matrix of expression data in the training set
y	binary labels for each sample in X_train
adj_pval_cutoff	fraction of data for training (default = 0.05)

bioinfo00/xnnet0 documentation built on Sept. 16, 2020, 8:22 a.m.