get_GSEA_results: Gene Set Enrichment Analysis (GSEA)

In bioinfo00/xnnet0: Explainable neural network classification

Description

This function performs GSEA using the Limma output and an annotation library

Usage

get_GSEA_results(
  limma_results,
  annotation_library,
  min_term_size = 10,
  max_term_size = Inf,
  rank_metric = "logFC"
)

Arguments

limma_results	out of Limma
annotation_library	list of gene sets contained in a given annotation library
min_term_size	min size of annotation term (default = 10)
max_term_size	max size of annotation term (default = Inf)
rank_metric	statistic used to rank genes for GSEA

bioinfo00/xnnet0 documentation built on Sept. 16, 2020, 8:22 a.m.