import_ProteinPilot: Import SCIEX ProteinPilot data

In biospi/bayesprot: Bayesian Protein-level Quantification for Proteomics

Description

Reads in a SCIEX ProteinPilot PeptideSummary.txt file for processing with bayesprot.

Usage

import_ProteinPilot(file = NULL, shared = F, min.conf = "auto",
  filter = c("discordant peptide type", "no iTRAQ", "weak signal"),
  data = NULL)

Arguments

file	Location of the PeptideSummary.txt file.
shared	Include shared peptides?
min.conf	Features with peptide ID confidence less than min.conf (between 0 - 100) are filtered out. The default "auto" uses the ProteinPilot default threshold.
filter	Other filters to use, which can include "discordant peptide type", "no iTRAQ" and "weak signal"
data	Advanced: Rather than specifying file, you can enter a data.frame preloaded with fread default parameters.

Value

A data.frame for input into bayesprot.

biospi/bayesprot documentation built on Nov. 9, 2019, 2:40 p.m.