API for biostuff/CNVPanelizer
Reliable CNV detection in targeted sequencing applications

Global functions
AmplProb Source code
AmplProbMultipeSamples Source code
Background Man page Source code
BackgroundReport Source code
BamIndexFilepaths Source code
BedToGenomicRanges Man page Source code
BootList Man page Source code
CNVPanelizer Man page Source code
CNVPanelizer-package Man page
CNVPanelizerFromReadCounts Man page Source code
CNVPanelizerFromReadCountsHELPER Man page Source code
CNVPanelizerServer Source code
CNVPanelizerUI Source code
CheckSignificance Source code
CollectColumnFromAllReportTables Man page Source code
CombinedNormalizedCounts Man page Source code
ConsensusCheck Source code
CreateSessionInputDirectory Source code
CreateSessionOutputDirectory Source code
DescriptiveStatistics Source code
EmptySessionOutputDirectory Source code
GeneMeanRatioMatrix Source code
GenePositionMean Source code
GenerateSynthetic Source code
GetGeneRegionsBand Source code
GetGeneRegionsStatusSummary Source code
GetSessionInputDirectory Source code
GetSessionOutputDirectory Source code
HaveMininumNumberOfAmplicons Source code
IndexGenesPositions Source code
IndexMultipleBams Man page Source code
IterateAmplNum Source code
KaryotypeAberrationPlot Source code
MoveFileTo Source code
NonSignificantGeneIndex Source code
NormalizeCounts Man page Source code
NumberOfUniqueAmplicons Source code
PlotBootstrapDistributions Man page Source code
PoolsPlots Source code
PositionMean Source code
RatioMatrix Source code
ReadCountsFromBam Man page Source code
ReadXLSXToList Man page Source code
ReliableStatus Source code
RemSigGenes Source code
ReportTables Man page Source code
RunCNVPanelizerShiny Man page Source code
SampleNoiseGenes Source code
SampleRatio Source code
SampleReadCountsByPool Source code
SampleReadCountsPools Source code
SelectReferenceSet Source code
SelectReferenceSetByInterquartileRange Man page Source code
SelectReferenceSetByKmeans Man page Source code
SelectReferenceSetByPercentil Man page Source code
SelectReferenceSetFromReadCounts Man page Source code
StatusHeatmap Man page Source code
Strict Source code
SubsamplingPositions Source code
UploadedFilepaths Source code
VerifiyIfOutputDirectoryExistsOrIsNotEmpty Source code
WriteListToXLSX Man page Source code
adjustedLength Source code
countAmplicons Source code
enforceDeterministicResult Source code
fixUploadedFilesNames Source code
multiplot Source code
ratiosMean Source code
referenceReadCounts Man page
revalueDF Source code
roundDf Source code
sampleReadCounts Man page
tss Source code
biostuff/CNVPanelizer documentation built on April 24, 2018, 3:26 p.m.