API for biostuff/CNVPanelizer
Reliable CNV detection in targeted sequencing applications

Global functions
AmplProb Source code
AmplProbMultipeSamples Source code
Background Man page Source code
BackgroundReport Source code
BedToGenomicRanges Man page Source code
BootList Man page Source code
CNVPanelizer Man page Source code
CNVPanelizer-package Man page
CNVPanelizerFromReadCounts Source code
CheckSignificance Source code
CollectColumnFromAllReportTables Source code
CombinedNormalizedCounts Man page Source code
ConsensusCheck Source code
DescriptiveStatistics Source code
GeneMeanRatioMatrix Source code
GenePositionMean Source code
GenerateSynthetic Source code
HaveMininumNumberOfAmplicons Source code
IndexGenesPositions Source code
IndexMultipleBams Man page Source code
IterateAmplNum Source code
NonSignificantGeneIndex Source code
NormalizeCounts Source code
NumberOfUniqueAmplicons Source code
Overview Source code
PlotBootstrapDistributions Man page Source code
PositionMean Source code
RatioMatrix Source code
ReadCountsFromBam Man page Source code
ReadXLSXToList Man page Source code
ReliableAberrationStatusHeatMap Source code
ReliableStatus Source code
RemSigGenes Source code
ReportTables Man page Source code
SampleNoiseGenes Source code
SampleRatio Source code
SelectReferenceSet Source code
SelectReferenceSetByKmeans Source code
SelectReferenceSetByPercentil Source code
SelectReferenceSetFromReadCounts Source code
StatusHeatmap Source code
StatusStability Source code
StatusStabilityTable Source code
Strict Source code
SubsamplingPositions Source code
VerifiyIfOutputDirectoryExistsOrIsNotEmpty Source code
WriteListToXLSX Man page Source code
adjustedLength Source code
countAmplicons Source code
enforceDeterministicResult Source code
ratiosMean Source code
referenceReadCounts Man page
revalueDF Source code
roundDf Source code
sampleReadCounts Man page
biostuff/CNVPanelizer documentation built on Oct. 23, 2017, 5:24 p.m.