SelectReferenceSetByKmeans: SelectReferenceSetByKmeans

Description Usage Arguments Value Author(s) Examples

Description

Select a reference set using Kmeans

Usage

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    SelectReferenceSetByKmeans(allSamplesReadCounts,
			       normalizationMethod = "tmm",
			       referenceNumberOfElements)

Arguments

allSamplesReadCounts

All samples read counts matrix

normalizationMethod

tmm (trimmed mean of m values) or tss (total sum scaling)

referenceNumberOfElements

Number of elements to select for the reference set

Value

Returns a list of sample identifiers to be used as reference

Author(s)

Cristiano Oliveira

Examples

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    SelectReferenceSetByKmeans(allSamplesReadCounts, 
                               normalizationMethod = "tmm", 
                               referenceNumberOfElements)
    

biostuff/CNVPanelizer documentation built on May 12, 2019, 9:25 p.m.