SelectReferenceSetByKmeans: SelectReferenceSetByKmeans
In biostuff/CNVPanelizer: Reliable CNV detection in targeted sequencing applications
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Select a reference set using Kmeans
Usage
1
2
3
SelectReferenceSetByKmeans(allSamplesReadCounts,
normalizationMethod = "tmm",
referenceNumberOfElements)
Arguments
allSamplesReadCounts
All samples read counts matrix
normalizationMethod
tmm (trimmed mean of m values) or tss (total sum scaling)
referenceNumberOfElements
Number of elements to select for the reference set
Value
Returns a list of sample identifiers to be used as reference
Author(s)
Cristiano Oliveira
Examples
1
2
3
4
5
6
SelectReferenceSetByKmeans(allSamplesReadCounts,
normalizationMethod = "tmm",
referenceNumberOfElements)
biostuff/CNVPanelizer documentation built on May 12, 2019, 9:25 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
Select a reference set using Kmeans
Usage
1 2 3 | SelectReferenceSetByKmeans(allSamplesReadCounts,
normalizationMethod = "tmm",
referenceNumberOfElements)
|
Arguments
allSamplesReadCounts |
All samples read counts matrix |
normalizationMethod |
tmm (trimmed mean of m values) or tss (total sum scaling) |
referenceNumberOfElements |
Number of elements to select for the reference set |
Value
Returns a list of sample identifiers to be used as reference
Author(s)
Cristiano Oliveira
Examples
1 2 3 4 5 6 |
SelectReferenceSetByKmeans(allSamplesReadCounts,
normalizationMethod = "tmm",
referenceNumberOfElements)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.