SelectReferenceSetByPercentil: SelectReferenceSetByPercentil

Description Usage Arguments Value Author(s) Examples

Description

Select a reference set using percentiles

Usage

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    SelectReferenceSetByPercentil(allSamplesReadCounts,
                                  normalizationMethod = "tmm",
                                  lowerBoundPercentage = 1,
                                  upperBoundPercentage = 99)

Arguments

allSamplesReadCounts

All samples read counts matrix

normalizationMethod

tmm (trimmed mean of m values) or tss (total sum scaling)

lowerBoundPercentage

Lower bound percentage

upperBoundPercentage

Upper bound percentage

Value

Returns a list of sample identifiers to be used as reference

Author(s)

Cristiano Oliveira

Examples

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    SelectReferenceSetByPercentil(allSamplesReadCounts,
                                  normalizationMethod = "tmm",
                                  lowerBoundPercentage = 1,
                                  upperBoundPercentage = 99)
    

biostuff/CNVPanelizer documentation built on May 12, 2019, 9:25 p.m.