SelectReferenceSetByPercentil: SelectReferenceSetByPercentil
In biostuff/CNVPanelizer: Reliable CNV detection in targeted sequencing applications
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Select a reference set using percentiles
Usage
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SelectReferenceSetByPercentil(allSamplesReadCounts,
normalizationMethod = "tmm",
lowerBoundPercentage = 1,
upperBoundPercentage = 99)
Arguments
allSamplesReadCounts
All samples read counts matrix
normalizationMethod
tmm (trimmed mean of m values) or tss (total sum scaling)
lowerBoundPercentage
Lower bound percentage
upperBoundPercentage
Upper bound percentage
Value
Returns a list of sample identifiers to be used as reference
Author(s)
Cristiano Oliveira
Examples
1
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SelectReferenceSetByPercentil(allSamplesReadCounts,
normalizationMethod = "tmm",
lowerBoundPercentage = 1,
upperBoundPercentage = 99)
biostuff/CNVPanelizer documentation built on May 12, 2019, 9:25 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Select a reference set using percentiles
Usage
1 2 3 4 | SelectReferenceSetByPercentil(allSamplesReadCounts,
normalizationMethod = "tmm",
lowerBoundPercentage = 1,
upperBoundPercentage = 99)
|
Arguments
allSamplesReadCounts |
All samples read counts matrix |
normalizationMethod |
tmm (trimmed mean of m values) or tss (total sum scaling) |
lowerBoundPercentage |
Lower bound percentage |
upperBoundPercentage |
Upper bound percentage |
Value
Returns a list of sample identifiers to be used as reference
Author(s)
Cristiano Oliveira
Examples
1 2 3 4 5 6 7 |
SelectReferenceSetByPercentil(allSamplesReadCounts,
normalizationMethod = "tmm",
lowerBoundPercentage = 1,
upperBoundPercentage = 99)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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